Arduino documentation states that you should not bypass its regulator to supply power - i.e.: don't supply 5V on the 5V pin.
I just read that you can bypass the onboard regulator - just add a diode from 5V (anode) to Vin (cathode) to avoid reverse driving the regulator; for example an 1N4001.
Current through a diode can only flow from the anode to the cathode. Usually diodes have a black or gray line near the cathode.
LEDs: "light emitting diodes":
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